Distribution of Culturable Myxobacteria in Central Inner
Mongolia and their Activity against Phytophthora infestans
Zhi Hua Wu1,2,3,
Xue Han Wang1, Qiang Ma1, Yi Xiu Ding1, Pu Yu
Zhao1 and Hui Rong Liu1*
1College of Life Sciences,
Inner Mongolia Agricultural University, Hohhot 010010, P. R. China
2Baotou Teachers’ College,
Baotou 014030, P. R. China
3The Second Affiliated
Hospital of Baotou Medical College, Inner Mongolia University of Science and
Technology, Baotou 014030, P. R. China
*For correspondence: huirong_liu@imau.edu.cn; wuzhihuaqueen@163.com
Received
06 November 2020; Accepted 28 January 2021; Published 10 May 2021
Abstract
Myxobacteria can produce rich and varied biological
active substances against bacteria, fungi and viruses, which have great
development and research value in medicine and agriculture. In this study, the
diversity of culturable myxobacteria in central Inner Mongolia in China was
studied and the effects of soil utilization mode, soil type and environmental
parameters on the distribution of myxobacteria in this region were analyzed.
Furthermore, the activities of myxobacteria against potato late blight pathogen
were tested. The results showed that Myxococcus,
Corallococcus, Pyxidicoccus, Cystobacter,
Archangium and Mellittangium were the dominant genera of myxobacteria in this
region. Soil utilization mode and soil types have
obvious influence on the distribution of myxobacteria. The populations of
myxobacteria were abundant in grassland and cultivated land samples, but few in
woodland and unused land samples. The diversity of myxobacteria in the soil
samples from fuvo-aquic soils, grey-cinnamon soils, castanozems, and bog soils
was relatively rich, while the richness of myxobacteria in aeolian soils,
solonetzs, skeletol soils and castano-cinnamon soils was poor. There was no
significant correlation between myxobacteria distribution and soil
environmental parameters (including the water content, pH value, content of
organic matter, content of available
phosphorus, content of hydrolytic nitrogen and content of available potassium).
Most of the
myxobacterial strains isolated in this area (83%) showed the activity against P. infestans, among
which the proportion of the disease-resistant strains belonging to Myxococcus and Corallococcus was high, the proportion of the strains belonging to Cystobacter and Mellittangium in the medium, and the proportion of the strains
belonging to Pyxidicoccus and Archangium low. The completion of this
work will enrich the myxobacteria resource bank in Inner Mongolia and lay a
foundation for the further study on myxobacteria and the development of
biological pesticide against potato late blight. © 2021 Friends Science
Publishers
Keywords: Myxobacteria; Diversity; Isolation;
Identification; Potato late blight; Phytophthora infestans
Introduction
Myxobacteria, a group of gram-negative bacteria (Kim et al. 2016), with social
behavior, complex multicellular behavior and morphogenesis (Sun et al. 2016),
are considered to be higher prokaryotes and known
for their predatory lifestyle (Livingstone et al.
2018). A typical feature of myxobacteria is that the cells move by gliding or
creeping, often presenting a thin, translucent film on a solid plate, forming
many concentric radial lines (Reichenbach 2001). The
vegetative cells are rod-shaped, and the cell membrane is elastic
(Zhang 2005). They are
propagated in a binary fission manner and grow slowly. Under a
variety of adverse conditions, such as nutrient deficiency, myxobacteria form visible
fruiting bodies through a complex multicellular behavior. Fruiting bodies are usually of various shapes
and sizes, with bright colors such as bright yellow, red, orange, brown, or
black (Anqel
et al. 2017). Myxobacteria are good natural
drug screening resources and have become a large group of microbial groups with
great potential for research and development (Diez et al. 2012). Bioactive substances produced by
myxobacteria have antibacterial, antifungal, anticancer, thrombolytic,
antitumor, hypoglycemic, hypotensive activities and etc. (Zhang et al. 2011;
Okanya et al. 2012). Myxobacteria have been actively screened for
natural products for several decades, with more than 100 core structures and
over 500 derivatives now having been published (Herrmann et al. 2017). Moreover, myxobacteria have great
potential for biosynthesis and 50% ~ 100% of myxobacteria can synthesize
secondary metabolites with biological activity (Wenzel and Müller 2009). In prokaryotes, myxobacteria rank
just behind Actinomyces and Bacillus in the number of biologically active
substances (Wang and Ma 2010). However,
the ratio of positive bacteria with bacteriostatic activity is higher than that
of Actinomycetes. Because myxobacteria can produce many bioactive substances
with novel structure and unique mechanism of action, they have become the
"micro-factory" of secondary metabolites with biological activity (Weissman and Müller 2009). Therefore, more and more
attention has been paid to the research of myxobacteria.
Potato is the fourth largest food
crop in the world after rice, wheat, and corn. The most serious disease of
potato is potato late bright, which is caused by Phytophthora infestans (Cui 2018). P. infestans is a
devastating pathogen that causes death of potato stems and tuber mainly by
invading the leaves, stems, and tubers of the plant (Haas et al. 2009). Due to
the limitation of cognitive level on some scientific problems such as the
pathogenic mechanism and the reproductive regulation mechanism of P.
infestans, there is still no way to effectively prevent and control potato
late blight, which has seriously hindered the production and industrialization
of potato (Ren et
al. 2016).
Baotou, Hohhot, Wulanchabu and
Xilinguole are distributed in the central part of Inner Mongolia with special
geographical conditions (Xu et al. 2001;
Chen and Gong 2005). In this area, the terrain is dominated by plateaus and
there are many types of soils. The precipitation gradually decreases from east
to west under the influence of the topography and the distance from the ocean.
The area has a typical mid-temperate zone monsoon climate with obvious climate
change in the four seasons and large annual and daily temperature differences.
Under these special geographical conditions, there are bound to be rich and
diverse resources of myxobacteria. However, so far, there have been few reports
on myxobacteria resources and their biological activities in central region of
Inner Mongolia. In this study, myxobacteria were isolated from 139 of soil
samples from the central region of Inner Mongolia and the correlation of
diversity of culturable myxobacteria with environmental factors in this region
was analyzed. Furthermore, the activities
of the myxobacterial strains against P.
infestans were determined.
Materials and Methods
Soil sample collection
Soil samples were collected from the four regions in the
central Inner Mongolia Autonomous Region, Baotou, Hohhot, Wulanchabu and
Xilinguole. A total of 139 soil samples, including 15 soil types and four
utilization modes, were collected from the upper layer of the soil (5–20 cm
depth) (Table 1).
Determination of soil
parameters
The moisture content of the samples was
determined by drying method
(Ye and Zhang 1984). The pH value was determined according to the Ecology
Common Experimental Research Methods and Techniques (Zhang 2006). NaHCO3
leaching - molybdenum antimony and colorimetric method was used to determine
the available phosphorus of soil samples (Xing et al. 2011). Soil
available potassium was determined by tetraphenylborate nephelometry (Li et al. 1982). The
alkaline hydrolysis diffusion method was used to determine the content of hydrolyzable nitrogen (Li 2010) and the
potassium dichromate-volumetric method was used to
determine the organic matter contents in the soils (Ji 2005).
Isolation of myxobacteria
Pretreatment of soil samples: The soil
samples that had been naturally air-dried and screened at 60 mesh were baked at
58°C for 1 h to remove the poor heat resistance of miscellaneous bacteria.
Approximately 30 g of the soil samples were placed in a 90 mm Petri dish,
soaked overnight at room temperature with cycloheximide solution at a final
concentration of 100 μg mL-1 to remove a portion of the
mold and yeast.
Rabbit dung pellets inducing method: The
pretreated soil samples were poured into the ST21CX solid culture dish and
paved. Three sterilized rabbit dung pellets were embedded in half and the
culture dishes were incubated at 30°C for 6 days. Continue to observe the
formation of myxobacteria fruiting bodies (Liu et al. 2011).
Escherichia
coli inducing method: Escherichia coli DH-5α
bacteria solution (20 μL) was added to 200 mL of LB liquid medium (Wu 2018) and the
cells were shaken overnight. The next day,
Escherichia coli DH-5α
bacteria solution was centrifuged and the cell precipitate was rowed three
uniform and thick parallel lines on WCX medium. Pretreated soil samples with
soybean size were picked and placed on the end of three parallel lines, and
then the culture dishes were incubated at 30°C (Sood et al. 2014).
Filter paper inducing method: A
sterilized filter paper was placed on the ST21CX medium as the only carbon
source and energy source. Pretreated soil samples with
soybean size were placed in different positions on the filter paper,
and the culture dishes were incubated at 30°C (Gaspari et al. 2005).
Table 1: Details of the soil
samples
Different
types of soil samples |
Cultivated
land |
Grassland |
Woodland |
Unused
land |
Total |
Fluvo-aquic soil |
5 |
8 |
|
2 |
15 |
Grey-cinnamon |
8 |
10 |
2 |
2 |
22 |
Castanozems |
13 |
19 |
1 |
1 |
34 |
Litho soil |
- |
2 |
- |
1 |
3 |
Saline |
3 |
3 |
1 |
1 |
8 |
Alluvial
soil |
1 |
1 |
1 |
- |
3 |
Brown
pedocals |
3 |
9 |
1 |
- |
13 |
Gray
forest soil |
2 |
3 |
2 |
- |
7 |
Bog
soil |
2 |
3 |
1 |
- |
6 |
Aeolian
soil |
1 |
2 |
1 |
- |
4 |
Meadow
soil |
5 |
6 |
- |
- |
11 |
Solonetzs |
- |
1 |
- |
- |
1 |
Chernozem |
3 |
4 |
- |
- |
7 |
Skeletol soil |
- |
1 |
- |
- |
1 |
Castano-cinnamon
soil |
2 |
2 |
- |
- |
4 |
Total |
48 |
74 |
10 |
7 |
139 |
-: The
number of samples was 0
Purification
of myxobacteria
Directly pick the fruiting body: The
myxobacteria were identified and the border of characteristic colonies or the
head of fruiting bodies was picked directly on fresh VY/2 medium with a sterile
inoculation needle to remove a portion of the larger and immobile bacteria (Guo et al. 2007). Fruiting
body of myxobacteria on the filter paper or the corroded filter paper was
transferred to fresh ST21CX medium with sterilized filter paper by a sterile
toothpick at 30°C constant temperature culture. This method requires repeated
transfer, until there is no other bacterial growth in the medium.
Secondary inducing method: Bacteriolytic
myxobacteria that cannot be directly purified were transferred into fresh WCX
medium with three uniform and thick E.
coli lines and incubated at 30°C. Then the fruiting bodies were picked from
the edges of the expanded colonies to the VY/2 medium to further culture.
Examination and preservation
of myxobacteria
The fruiting bodies
of the strains were incubated in the CAS liquid medium and shaken culture for
36 h, then to observe whether there was turbidity in the CAS liquid medium. As
the myxobacteria grow slowly in nutrient-rich medium, while the other
miscellaneous bacteria grow fast relatively, so the clarification of CAS liquid
culture medium can be considered that the strain has been pure. The purified
myxobacteria strains were stored in 20% sterilized glycerol at -80°C for a long
time.
Identification of
myxobacteria
Morphological observation: The Nikon
SMZ745 stereomicroscope and Sony digital camera were used to observe and
photograph the colony morphology and fruiting bodies of myxobacteria on the
VY/2 medium and ST21CX medium.
Molecular identification: The total chromosomal DNA was extracted as
described by Zhou et al.
(2004). The first set of primers (forward 27F:
5′-AGAGTTTGATCCTGGCTCAG-3′, and reverse 1495R:
5′-CTACGGCTACCTTGTTACGA-3′) was designed to amplify the partial 16S
rDNA of myxobacteria
(Zhang et al. 2010). The reaction started with
denaturation at 94°C for 30 s, followed by primer annealing at 55°C for 45 s
and primer extension at 72°C for 90 s. After 30 cycles of reaction, an
extension step was followed at 72°C for 5 min. The PCR products were sent to Beijing Liuhe Huada Gene
Technology Co., Ltd. for sequencing. The 16S rDNA sequences of the tested
strains were compared with the known sequences in the GenBank database by BLAST
in NCBI.
Activity analysis of
myxobacteria against P. infestans
The activity of the purified myxobacterial strains
against P. infestans was detected by the plate confrontation culture
method (Li et al. 2011). The
phytopathogenic oomycete P. infestans
was cultured on a rye medium in a 9-cm dish at 18°C for 3 days in the dark
until the colony grew to approximately 1 cm in diameter. Agar block of purified
strains was placed 1 cm away from the front of the colony. After incubating at
18°C for 8 days, the distance between the edge of the colony and the agar block
(control: 0 mm) was measured. The resistance of each strain to P. infestans
was tested three times.
Data processing
Table 3: Number of myxobacterial strains isolated and
purified by different methods
Methods of isolation |
No. of isolated strains |
No. of purified strains |
Purification rate of strains (r/%) |
Rabbit dung pellets inducing method |
158 |
153 |
96.83 |
Escherichia coli inducing method |
245 |
231 |
94.29 |
Filter
paper inducing method |
283 |
0 |
0 |
Total
number |
686 |
384 |
55.98 |
Table 2: Nutrient grade distribution of soil samples from the central region of
Inner Mongolia
Environmental
parameter levels of soil samples |
Percentage of environmental
parameters of soil samples at different levels(%) |
|||||
Water content |
pH value |
Content of organic matter |
Content of available
phosphorus |
Content of hydrolyzed nitrogen |
Content of available potassium |
|
I |
|
3.60 |
10.07 |
5.76 |
5.76 |
6.47 |
II |
7.19 |
35.25 |
10.79 |
14.39 |
3.60 |
15.11 |
III |
5.04 |
49.64 |
23.02 |
43.17 |
11.51 |
31.65 |
IV |
15.83 |
10.07 |
37.41 |
28.06 |
23.74 |
28.06 |
V |
27.34 |
1.44 |
18.71 |
2.88 |
31.56 |
10.79 |
VI |
44.60 |
0 |
0 |
5.76 |
23.74 |
7.91 |
I:
Strong alkaline or very rich. II: Slightly alkaline or rich. III: Neutral or
suitable. IV: Slightly acidic or low. V: Highly acidic or very low. VI:
Extremely acidic or extremely low
The preliminary processing and mapping of the data was
done using Excel 2010 and the correlation analysis was done using SPSS V. 24.0.
Results
The determination of soil
environmental parameters
The parameters of 139 soil samples were measured and
compared with the soil nutrient grading standards of the second national soil
survey in China (Table 2). The results showed that
about 38.85% of the soil samples were alkaline. 49.64% of the soil samples were
neutral and 11.51% of the soil samples were acidic. The water content of 87.77%
soil samples was lower than 16%, which was in the state of light drought to
severe drought. For the content of organic matter, 56.12% of soil samples were
at a low to very low level. The content of available phosphorus was distributed
evenly, with a certain proportion in each grade. Of which, 43.17% of soil
samples were at medium level, 36.70% at low to extremely low level and 20.15%
at high to very high level. As for the content of available potassium, 31.65%
of soil samples were at medium level and 46.76% at low to extremely low level.
However, the content of hydrolyzed nitrogen was generally in a state of
deficiency, with 79.04% of soil samples at a low to extremely low level. These
results indicated that soil fertility was generally poor in central Inner
Mongolia.
Isolation and identification
of myxobacteria
The myxobacteria were isolated and identified from 139
soil samples collected from the central region of Inner Mongolia. A total of
686 strains with morphological characteristics of myxobacteria were isolated
and 384 strains of which were purified and identified, with an average
purification rate of 55.98% (Table 3). Among them, the number of strains
isolated by filter paper inducing method was the most, while the number of
strains isolated by rabbit dung pellets inducing method was the least. However,
the strains isolated by rabbit dung pellets inducing method were the easiest to
be purified, and the purification rate of this method was the highest. The
purification rate of filter paper inducing method was the lowest.
According to the classification
standards of Bergey’s Manual of Systemaic Bacteriology (Boone and Castenholz 2004), from the
characteristics of the color and morphology of colonies and fruiting bodies of
the purified strains and their gliding movement on the plate, these strains can
be preliminarily classified into six genera, including Myxococcus, Corallococcus,
Pyxidicoccus, Cystobacter, Archangium and Melittangium
(Fig. 1 and 2).
Fig. 2: Fruiting body morphology of myxobacteria
isolated from rabbit dung pellets inducing method and E. coli inducing method (30×)
(a)
Myxococcus fulvus, (b) Myxococcus virescens, (c) Myxococcus coralloides, (d) Myxococcus xanthus, (e) Myxococcus favescens, (f)
Myxococcus stipitatus,
(g) Myxococcus macrosporus, (h) Corallococcus coralloides, (i) Corallococcus exiguous, (j) Corallococcus macrosporus,
(k) Corallococcus spp., (l) Pyxidicoccus fallax, (m) Pyxidicoccus spp., (n) Cystobacter badius, (o) Cystobacter violaceus, (p-q) Cystobacter
spp., (r) Archangium gephyra, (s) Archangium
spp. and (t) Melittangium spp.
(b)
(c)
(d)
Fig. 1: Colony morphology of myxobacteria isolated by the rabbit dung pellets
inducing method and E. coli inducing
method
(e)
(a) Myxococcus fulvus (b) Myxococcus
virescens (c) Myxococcus coralloides (d) Myxococcus xanthus (e) Myxococcus favescens (f)
Myxococcus stipitatus
(g) Myxococcus macrosporus (h) Corallococcus coralloides (i) Corallococcus exiguus (j) Corallococcus macrosporus (k) Corallococcus spp. (l) Pyxidicoccus fallax (m) Pyxidicoccus spp. (n) Cystobacter badius (o) Cystobacter violaceus (p-q) Cystobacter
spp. (r) Archangium gephyra (s) Archangium
spp. (t) Melittangium spp.
(f)
The purified 384 strains were
identified further by 16S rRNA gene sequences. The results showed that the
similarities between the 16S rRNA gene sequences of all strains and the
sequences reported in the GenBank database were more than 97%. Phylogenetic
tree analysis with Neighbor-Joining Tree Algorithm showed that all strains
could be divided into 2 large branches and 4 small branches. Myxococcus、Corallococcus
and Pyxidicoccus were on the
same large branch, belonging to Myxococcaceae. The other large branch included Archangium, Cystobacter and Melittangium,
all belonging to Cystobacteraceae. According to the morphological
classification of myxobacteria, both Myxococcaceae and Cystobacteraceae
belonged to the Cystobacterineae (Fig. 3).
Through morphological observation
and 16S rRNA gene sequences analysis, all of 348 strains belonged to
Cystobacterineae, including 278 strains of Myxococcaceae and 70 strains of
Cystobacteraceae. These strains were classified into six genera, including Myxococcus, Corallococcus, Pyxidicoccus, Cystobacter,
Archangium and Melittangium. Among them, 193 strains belonged to Myxococcus (Myxococcus fulvus 67
strains, Myxococcus virescens 41 strains, Myxococcus coralloides 6
strains, Myxococcus xanthus 45 strains, Myxococcus favescens 19
strains, Myxococcus stipitatus 10 strains, Myxococcus macrosporus 5
strains). 76 strains belonged to Corallococcus (Corallococcus coralloides 39 strains, Corallococcus exiguous 27 strains, Corallococcus macrosporus 8 strains, Corallococcus spp. 2 strains). 9
strains belonged to Pyxidicoccus (Pyxidicoccus fallax 8
strains, Pyxidicoccus spp. 1 strain).45 strains belonged to
Cystobacter (Cystobacter violaceus 25 strains, Cystobacter
badius 16 strains, Cystobacter spp. 4 strains).10 strains belonged to
Archangium (Archangium gephyra
8 strains, Archangium spp. 2
strains). 15 strains belonged to Mellittangium (Mellittangium spp. 15 strains).
Distribution of myxobacteria
in soil samples of different utilization types
It could be clearly seen from Table 4 that the average
number of the myxobacterial strains isolated and purified from cultivated land
soil samples was the highest, repectively 5.02 and 2.69, followed by that of
grassland and woodland soil samples. The average number of the myxobacteria
strains isolated and purified from the unused land soil samples was the lowest.
The myxobacteria strains belonging
to Myxococcaceae and Cystobacteraceae
were all obtained from soil samples of four different utilization types. Of
which, six genara of myxobacteria, including Myxococcus, Corallococcus,
Pyxidicoccus, Cystobacter, Archangium and
Melittangium, were purified from the
soil samples of cultivated land, grassland and woodland, while only three
genera of myxobacteria were purified from the samples of unused land, including Myxococcus, Corallococcus and Cystobacter. The average number of the
strains belonging to Myxococcus, Cystobacter and Corallococcus was the
highest in the cultivated land soil samples, but the lowest in the unused land
soil samples. The strains belonging
to Pyxidicoccus, Archangium and Mellittangium were all not purified from the unused land
soil samples. The average number of the strains belonging to Mellittangium was also the highest in
the cultivated land soil samples, while the average number of the strains
belonging to Pyxidicoccus
and Archangium was the highest in the woodland soil
samples. In soil samples of four
utilization types, the average number of the strains belonging to Myxococcus ranked first, followed by the average number of the strains belonging
to Corallococcus, and the average number of the strains belonging to
Cystobacter ranked third. The average
number of the strains belonging to Pyxidicoccus,
Archangium, and Mellittangium was
significantly lower than the average
number of the strains belonging to
the other three genera, and in the unused land soil samples, the three genera
were not even isolated.
Distribution of myxobacteria in soil samples of different
types
It could be clearly seen from Table 5 that the average
number of strains isolated from solonetzs and alluvial soils was the highest
and the average number of strains purified from solonetzs was the highest, while
the average number of strains isolated from chernozems was the lowest and the
average number of strains purified from gray-cinnamon soils was the lowest.
Myxococcaceae and Cystobacteraceae were all purified from 15 different soil
types, with differences in the varieties and quantities of the strains. Only
three genera of myxobacteria were purified from aeolian soils, solonetzs,
skeletol soils and castano-cinnamon soils. Four genera of myxobacteria were
purified from litho soils, alluvial soils and gray forest soils. Five genera of
myxobacteria were purified from saline soils, brown pedocals, meadow soils and
chernozems. Six genera of
Fig. 3: Phylogenetic tree for the myxobacterial strains
based on 16S rRNA gene sequences
myxobacteria were purified from fluvo-aquic soils,
grey-cinnamon soils, castanozems, and bog soils,
showing a rich diversity of myxobacteria. Of the 6 genera of myxobacteria
isolated, only Myxococcus was
isolated from all soil types. The average number of the strains belonging to Myxococcus
isolated from alluvial
soils and solonetzs was the highest, while the average number of the strains
belonging to Myxococcus isolated
from chernozems was the lowest. The strains belonging to Table
4: Distribution of
myxobacteria in soil samples of different utilization types
Utilization types of
soil samples |
Total number of the isolated strains |
Average number of the isolated strains/soil
sample |
Total number of the purified strains |
Average number of the purified strains/soil
sample |
Myxococcus |
Corallococcus |
Pyxidicoccus |
Cystobacter |
Archangium |
Mellittangium |
||||||
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
|||||
Cultivated
land |
241 |
5.02 |
129 |
2.69 |
70 |
1.46 |
30 |
0.63 |
3 |
0.06 |
16 |
0.33 |
4 |
0.08 |
6 |
0.13 |
Grassland |
338 |
4.57 |
185 |
2.50 |
106 |
1.43 |
37 |
0.50 |
5 |
0.07 |
24 |
0.32 |
5 |
0.07 |
8 |
0.11 |
Woodland |
45 |
4.50 |
23 |
2.30 |
11 |
1.10 |
6 |
0.60 |
1 |
0.10 |
3 |
0.30 |
1 |
0.10 |
1 |
0.10 |
Unused
land |
26 |
3.71 |
11 |
1.57 |
5 |
0.71 |
3 |
0.43 |
0 |
0 |
2 |
0.29 |
0 |
0 |
0 |
0 |
Total |
650 |
4.68 |
348 |
2.50 |
193 |
1.39 |
76 |
0.55 |
9 |
0.06 |
45 |
0.32 |
10 |
0.07 |
15 |
0.11 |
Table 5: Distribution of myxobacteria in different types of soil samples
Different types of soil samples |
Total number of the isolated strains |
Average number of the isolated strains /soil
sample |
Total number of the purified strains |
Average number of the purified strains / soil
sample |
Myxococcus |
Corallococcus |
Pyxidicoccus |
Cystobacter |
Archangium |
Mellittangium |
||||||
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
Total number |
Average number |
|||||
Fluvo-aquic soil |
72 |
4.80 |
38 |
2.53 |
21 |
1.40 |
8 |
0.53 |
1 |
0.07 |
5 |
0.33 |
1 |
0.07 |
2 |
0.13 |
Grey-cinnamon |
101 |
4.59 |
56 |
2.55 |
28 |
1.27 |
14 |
0.64 |
1 |
0.05 |
9 |
0.41 |
1 |
0.05 |
3 |
0.14 |
Castanozems |
154 |
4.53 |
84 |
2.47 |
49 |
1.44 |
19 |
0.56 |
1 |
0.03 |
10 |
0.29 |
2 |
0.06 |
3 |
0.09 |
Litho soil |
14 |
4.67 |
8 |
2.67 |
4 |
1.33 |
2 |
0.67 |
0 |
0 |
1 |
0.33 |
1 |
0.33 |
0 |
0 |
Saline |
40 |
5.00 |
22 |
2.75 |
12 |
1.50 |
5 |
0.63 |
2 |
0.25 |
2 |
0.25 |
0 |
0 |
1 |
0.13 |
Alluvial
soil |
18 |
6.00 |
10 |
3.33 |
6 |
2.00 |
2 |
0.67 |
0 |
0 |
1 |
0.33 |
1 |
0.33 |
0 |
0 |
Brown
pedocals |
60 |
4.62 |
33 |
2.54 |
22 |
1.69 |
7 |
0.54 |
1 |
0.08 |
2 |
0.15 |
0 |
0 |
1 |
0.08 |
Gray
forest soil |
30 |
4.29 |
13 |
1.86 |
7 |
1.00 |
3 |
0.43 |
0 |
0 |
2 |
0.29 |
0 |
0 |
1 |
0.14 |
Bog
soil |
32 |
5.33 |
18 |
3.00 |
9 |
1.50 |
2 |
0.33 |
1 |
0.17 |
3 |
0.50 |
1 |
0.17 |
2 |
0.33 |
Aeolian
soil |
20 |
5.00 |
11 |
2.75 |
6 |
1.50 |
3 |
0.75 |
0 |
0 |
2 |
0.50 |
0 |
0 |
0 |
0 |
Meadow
soil |
50 |
4.55 |
25 |
2.27 |
14 |
1.27 |
5 |
0.45 |
1 |
0.09 |
4 |
0.36 |
1 |
0.09 |
0 |
0 |
Solonetzs |
6 |
6.00 |
4 |
4.00 |
2 |
2.00 |
1 |
1.00 |
1 |
1.00 |
0 |
0 |
0 |
0 |
0 |
0 |
Chernozem |
29 |
4.14 |
14 |
2.00 |
6 |
0.86 |
3 |
0.43 |
0 |
0 |
3 |
0.43 |
1 |
0.14 |
1 |
0.14 |
Skeletol soil |
5 |
5.00 |
3 |
3.00 |
1 |
1.00 |
0 |
0 |
0 |
0 |
1 |
1.00 |
0 |
0 |
1 |
1.00 |
Castano-cinnamon soil |
19 |
4.75 |
9 |
2.25 |
6 |
1.50 |
2 |
0.50 |
0 |
0 |
0 |
0 |
1 |
0.25 |
0 |
0 |
Total |
650 |
4.68 |
348 |
2.50 |
193 |
1.39 |
76 |
0.55 |
9 |
0.06 |
45 |
0.32 |
10 |
0.07 |
15 |
0.11 |
Corallococcus were
isolated from all soil types except skeletol soils, in which the average number
of strains belonging to Corallococcus
was the highest in solonetzs and the lowest in bog
soils. The strains belonging to Cystobacter were isolated from all soil types except solonetzs
and castano-cinnamon soils. The average number of strains belonging to Cystobacter was the highest in skeletol
soils and the lowest in brown pedocals. The strains belonging to Pyxidicoccus were isolated from all soil
types except litho soils, alluvial soils, gray forest soils, aeolian soils,
chernozems, skeletol soil and castano-cinnamon soils. The average number of
strains belonging to Pyxidicoccus was
the highest in solonetzs and the lowest in castanozems. The strains belonging
to Archangium were isolated from all
soil types except saline soils, brown pedocals, gray forest soils, aeolian
soils, solonetzs and skeletol soils. The average number of strains belonging to
Archangium was the highest in litho
soils and alluvial soils and the lowest in grey-cinnamon soils. The strains
belonging to Mellittangium were
isolated from all soil types except litho soils, alluvial soils, aeolian soils,
meadow soils, solonetzs and castano- cinnamon
soils. The average number of strains belonging to Mellittangium was the highest in skeletol soils and the lowest in
brown pedocals. In most soil types, the average strain number of Myxococcus ranked first, that of Corallococcus followed and the average
strain number of Cystobacter ranked
third. The average strain number of myxobacteria from the other three genera
was significantly lower than that from the above three genera and in some soil
types, myxobacteria from some genera were not even isolated.
Correlation analysis between
the distribution of culturable myxobacteria and environmental parameters
The Pearson correlation coefficient was shown in Table 6.
The number of bacteriolytic myxobacteria and the total number of strains were
weak positively correlated with water content, pH value, content of organic
matter, content of hydrolytic nitrogen and content of available potassium, and
weak negatively correlated with the content of available phosphorus. The number
of celluloytic myxobacteria were weak positively correlated with water content
and content of organic matter, and weak negatively correlated with the content
of available phosphorus and content of available potassium, and no significant
correlation with pH value and content of hydrolytic nitrogen. It could also be
seen from the table that there was no significant correlation between the
environmental parameters and the number of the bacteriolytic myxobacteria, the
number of the celluloytic myxobacteria and the total number of strains. This
may be due to the isolation and purification process of myxobacteria was
cumbersome and difficult, resulting in the loss of some strains. On the other
hand, it may be due to the addition of antibiotics in the culture medium
damaged some myxobacteria, resulting in the varieties of isolated myxobacteria
less. Therefore, the number of strains currently isolated did not very
objectively represent the number of strains actually contained in the sample.
Table
6: Person
correlation coefficient of soil parameters and the distribution of myxobacteria
Pearson correlation coefficient (r) |
Bacteriolytic myxobacteria |
Celluloytic myxobacteria |
Total No. of strains |
Water
content |
0.093 |
0.012 |
0.072 |
pH
value |
0.089 |
0.000 |
0.063 |
Organic
matter |
0.013 |
0.005 |
0.012 |
Available
phosphorus |
-0.017 |
-0.009 |
-0.016 |
Hydrolytic
nitrogen |
0.076 |
0.000 |
0.054 |
Available
potassium |
0.098 |
-0.035 |
0.052 |
│r│<
0.2 is very low correlation. 0.2 ≤ │r│ < 0.4 is low
correlation. 0.4 ≤ │r│< 0.7 for moderate correlation. 0.7 ≤
│r│ < 0.9 is highly correlated. 0.9 ≤ │r│ <
1.0 is extremely high correlation
Fig. 4: Scatter diagram of inhibition zone diameter of myxobacteria strains
against P. infestans
Table 7: Antibiotic
activity of different species of myxobacteria against P. infestans
Species |
Total No. of strains |
No. of strains against P. infestans |
Resistant strains (%) |
Myxococcus fulvus |
67 |
64 |
95.52 |
Myxococcus virescens |
41 |
39 |
95.12 |
Myxococcus coralloides |
6 |
5 |
83.33 |
Myxococcus xanthus |
45 |
41 |
91.11 |
Myxococcus favescens |
19 |
15 |
78.95 |
Myxococcus stipitatus |
10 |
7 |
70.00 |
Myxococcus macrosporus |
5 |
4 |
80.00 |
Corallococcus coralloides |
39 |
35 |
89.74 |
Corallococcus exiguous |
27 |
24 |
88.89 |
Corallococcus macrosporus |
8 |
6 |
75.00 |
Corallococcus spp. |
2 |
1 |
50.00 |
Pyxidicoccus fallax |
8 |
4 |
50.00 |
Pyxidicoccus spp. |
1 |
0 |
0.00 |
Cystobacter badius |
16 |
11 |
68.75 |
Cystobacter violaceus |
25 |
17 |
68.00 |
Cystobacter spp. |
4 |
2 |
50.00 |
Archangium gephyra |
8 |
4 |
50.00 |
Archangium spp. |
2 |
0 |
0.00 |
Mellittangium spp. |
15 |
10 |
66.67 |
Total |
348 |
289 |
83.05 |
Activity analysis of
myxobacteria against P. infestans
Among 348 strains of myxobacteria, 289 strains showed
different degrees of inhibition on the growth of P. infestans,
accounting for 83% of the total myxobacteria. Among them, 24 strains showed
strong antagonistic activity with a diameter of inhibition zone more than 20
mm. The inhibition zone diameter of 124 strains was 15~20 mm. The inhibition
zone diameter of 148 strains was 10~15 mm. The inhibition zone diameter of only
one strain was less than 10 mm (Fig. 4).
As shown in Table 7, the
statistical analysis on the antagonistic activity of different species and
genera of myxobacteria showed
that Myxococcus had the highest percentage of resistant strains, 90.67%.
Corallococcus was next with a percentage of 86.84% for resistant
strains. The percentage of resistant strains of Cystobacter
and Mellittangium was 66.67%. The percentage of the strains
belonging to Pyxidicoccus with
the activity against P. infestans was 44.44%. The percentage of resistant
strains of Archangium was 40%.
Discussion
According to the analysis and statistics of soil
environmental parameters in central Inner Mongolia, it was found that the soil
samples in this area were basically neutral or alkaline, and the water content
of soil samples was very low, generally in a dry state; the content of
hydrolyzed nitrogen was in a state of deficiency; the content of organic matter
and available potassium more than half of the soil samples were in a deficient
state, while the content of available phosphorus was relatively high, only
36.70% of the soil samples were below the medium level, but the suitability of
a single element cannot change the overall fertility status of this area. Ding et
al. (2017) analyzed
the physical and chemical properties of the soil in western Inner Mongolia and
found that the soil in this area was basically neutral and alkaline, the water
content was very low, and it was generally in a dry state. The average content
of alkali nitrogen was very low. The average content of available potassium and
organic matter were at a low level, while the average content of available
phosphorus was high. This was basically the same as the physical and chemical
properties of the soil in central Inner Mongolia. The analysis of soil
nutrients in Guanzhong area of Shanxi Province by Zhao (2015) showed that the contents of organic matter,
available nitrogen, available phosphorus and available potassium in the area
are respectively in the fifth, fourth, third and second grades of soil nutrient
grading standards. That is to say, except the organic matter in the state of
deficiency, other environmental parameters were in the appropriate and above
levels. Fu (2005) analyzed
the soil resources in the vegetable base of Zhengzhou City of Henan Province
and found that the soil fertility in the suburbs was medium. Apart from the low
content of available phosphorus, the other nutrient contents were at a medium
level. In comparison, it can be seen that the soil in the central part of Inner
Mongolia is seriously arid and the soil fertility level is low, which can also
explain a series of ecological environment deterioration problems such as
severe sandstorm, desertification, and vegetation degradation in this area.
Morphological observation and 16S
rRNA gene sequence analysis revealed that diversity of myxobacteria in the
collected soil samples were rich. The isolated 348 strains of myxobacteria
belonged to Cystobacterineae, including 278 strains of Myxococcaceae and 70
strains of Cystobacteraceae. Among them, there were 193 strains of Myxococcus,
76 strains of Corallococcus, 9 strains of Pyxidicoccus, 45
strains of Cystobacter, 10 strains of Archangium and 15 strains
of Melittangium. The results indicated that myxobacteria had superior
viability in the poor soil environment. These bacteria were the dominant genus
of myxobacteria in central Inner Mongolia. Scientists have also found
myxobacteria in soil samples collected in the Antarctic, which did not survive
in the laboratory conditions. Myxococcus and Nannocystis have been
found in the environment of 6°C ~ 8°C in the Alps for the first time (Menne and Rückert 1988) and traces of Myxococcus
have also been found in the hot desert soil of Arizona (Reichenbach 1970). These findings indicated that
myxobacteria can survive in extreme environment, indicating their strong
survival ability, which is consistent with the result of this study. Charousová
et al. (2017) isolated a
total of 79 strains of myxobacteria from 10 soil samples collected in Slovakia,
belonging to Myxococcus, Corallococcus, Sorangium, and Polyangium.
Li et al. (2014) used
Semi-Nested PCR-DGGE technology to analyze 8 soils collected from Xinjiang and
found 5 genera of myxobacteria, less than the genera found in this study.
However, they also found the genera that were not present in this experiment,
namely Stigmatella and Anaeromyxobacter. Wu et al. (2005)
in Shandong University and Zhou (2013) used
molecular hybridization and high-throughput sequencing technology to analyze
the diversity of myxobacteria in the campus soil, and the results showed that
myxobacteria in soil samples were rich in diversity. They covered almost all
known families and a large number of unclassified myxobacteria. Therefore, we
speculate that new myxobacterial resources may need to rely on new methods to
isolate in the future.
According to the distribution of
myxobacteria in the samples of different utilization types, 6 genus of
myxobacteria were purified from the soil samples of cultivated land, grassland
and woodland, while only 3 genus of myxobacteria were purified from the samples
of unused land, namely Myxococcus, Corallococcus and Cystobacter.
In terms of myxobacteria population, 19 species of myxobacteria were purified
from grassland samples. Cultivated land samples were followed by 18 species. 13
species of myxobacteria were purified from the woodland samples, while only 8
species were purified from the unused land samples. It can be seen that the
utilization types of soil had a significant impact on the species and genus
distribution of myxobacteria. Among them, the myxobacteria in the grassland and
cultivated land samples were abundant, while the myxobacteria in the woodland
and unused land samples are less. Charousová et al. (2017) isolated myxobacteria from alpine soil, forest
soil and farmland soil of Slovakia, and found that Myxococcus and Corallococcus
were the most widely distributed and the best source for myxobacteria was
farmland soil. However, Li et al. (2005) and Ding (2017)
respectively found that myxobacteria were the most abundant in the forest
samples in Hebei Province and Ordos plateau, slightly different from the
results of this study. The reason may be that the difference in the sampling
location and the physical and chemical properties of the samples resulted in a
difference in the population of myxobacteria in the soil samples of the same
utilization type. It can be seen from the distribution of myxobacteria in the
soil samples of different types that six genera of myxobacteria were purified
from Fluvo-aquic soils, Grey-cinnamon soils, Castanozems and Bog soils, showing
a rich diversity of myxobacteria. Among various types of soil, Fluvo-aquic
soils, Grey-cinnamon soils, Castanozems and Bog soils are the relatively
fertile soil types, while Aeolian soils is the relatively poor soil type,
proving that myxobacteria grow better in the nutrient-rich environment.
Although some environmental parameters of Skeletol soil were at the appropriate
level, there was only one sample of Skeletol soils and Solonetzs, so the
general significance of results is poor. This result was consistent with the
study of Li et al. (2005) on the
distribution of myxobacteria in samples of different properties.
The results of correlation analysis
between the distribution of myxobacteria and environmental parameters showed
that there was no significant correlation between them. There may be several
reasons for this: Firstly, due to the cumbersome and difficult isolation and
purification process of myxobacteria, some strains were lost during the isolation
and purification process. Second, due to some pretreatment measures of the soil
samples before isolation, some of the myxospores in the samples were possibly
damaged to be unable to geminate normally. For example, generally, the samples
were treated at 58°C for 12 h before isolation of myxobacteira. The
pretreatment time may be too long. Third, due to the addition of antibiotics in
the culture medium, some myxobacteria could be inhibited, resulting in fewer
types of myxobacteria isolated. Therefore, the currently isolated strains do
not very objectively represent the species actually contained in the sample,
resulting in biased results. Zhou (2013) found that the abundance of
myxobacteria was less correlated with temperature, pH, content of organic
carbon, carbon to nitrogen ratio, and had no correlation with precipitation and
particle grading. The central region of Inner Mongolia has a vast territory and
a large number of soil types. There are many reasons for the difference in the
diversity of myxobacteria. In addition to the environmental factors studied in
this paper, heavy metals, salinity, rainfall, topography and other factors may
also affect the diversity of myxobacteria.
Several myxobacterial metabolites have been purified and
shown to be bioactive and therefore myxobacteria represent an underexploited
resource for bioactive discovery (Landwehr
et al. 2016).
In this study, the activity analysis of myxobacteria against P. infestans
showed that 289 strains of 348 strains of myxobacteria showed different degrees
of inhibition on the growth of P. infestans, and the percentage of
resistant strains was as high as 83%. Due to the growing population, more and
more pesticides are used to improve the production of food, but they are
generally highly toxic, and pesticide poisoning incidents occur every year.
Potato is one of the world's four major food crops, after wheat, corn and rice,
but its production is reduced annually due to tuber rot. Potato late blight is
a devastating disease caused by P. infestans, which can cause the death of potato stem and leaves and rancid
tuber (Kroon et al. 2011). Therefore, it is extremely
urgent to develop effective and harmless pesticides to prevent and control
potato late blight. In this study, most of the myxobacterial strains isolated
from soil samples from central Inner Mongolia showed the activity in inhibiting
the growth of potato late blight pathogen P. infestans providing a new
idea for the research and development of effective pesticides for the
prevention and control of potato late blight.
Acknowledgements
The authors acknowledge the efforts of Ye Dong and Zi Wen Guo
for isolating the microorganism.
Funding Source
This study was supported by the National Natural Science
Foundation of China (No. 31370058), Natural Science Foundation Program of Inner
Mongolia, China (No. 2019MS03066), and the 10th Batch of "Grassland
Elite" Project of Inner Mongolia, China (No. DC2000000758).
Author
Contributions
Wu ZH and Liu HR conceived
the experiments, Wu ZH, Wang XH and Ma Q conducted the experiments, Wu ZH, Ding
YX and Zhao PY analysed the results. All authors reviewed the manuscript.
Conflicts of Interest
The authors declare that they have no conflicts of interest,
and manuscript is approved by all authors for publication. There is no conflict
of interest among the institutions regarding the research when it has been
conducted at the institutions other than authors institutions. If such a
conflicting situation arises, the authors will be held responsible.
Data Availability
The datasets generated during and/or analysed during the
current study are available from the corresponding author on reasonable
request.
Ethics Approval
This article does not contain any studies with human
participants or animals performed by any of the authors.
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